FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931919

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931919
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509568
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8710.17092910072846018No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7660.15032341120321527No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7320.14365109269027881No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6990.13717501883948754No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6290.12343789248932428No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG6250.12265291384074353No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6040.11853177593569456No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5650.11087823411203214No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5620.11028950012559659No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)