FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931920

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931920
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509568
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA17820.34970798794272795No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13910.2729763250439588No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11420.22411140416980657No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10490.20586065059030392No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9110.17877888721426777No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8020.1573882190404421No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7100.13933371012308465No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG6760.13266139161014823No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6750.13246514694800302No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5520.10832705350414468No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5350.10499089424767646No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)