FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931926

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931926
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486178
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41500.853596830790369No Hit
CCGGCTCTGGGCGCTCGTCGTAAGAAAAAAA23450.4823336308923892No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22030.453126221260526No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15750.32395542373369424No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13790.28364097100239005No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11140.22913418542180025No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10490.21576459650580654No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10140.2085655870895022No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10100.2077428431562103No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG8840.18182640925751475No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8740.17976954942428494No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8700.178946805490993No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG8340.17154211009136572No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7810.16064075297524777No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6680.13739823685975097No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6650.136781178909782No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5720.11765238246074483No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5410.11127611697773244No Hit
ACTCGTCCGAGCCGCCCGGCTACCGTACCGC5390.11086474501108648No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4960.1020202477281983No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4940.10160887576155235No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4910.10099181781158342No Hit

[OK]Adapter Content

Adapter graph