FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931927

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931927
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495713
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCACGGTGCGGGGTCGCCTCACAGGACGGGGTACGGCGGCGCA23890.481932085702816No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17420.3514130151922584No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13770.27778170029835814No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11090.22371815949954912No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10510.2120178409684636No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9750.19668638910014463No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT9310.18781028538690736No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9090.1833722335302887No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG8850.17853072241397747No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8190.1652165668441215No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7510.15149895201457295No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6840.13798306681487071No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6510.13132598902994272No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6280.12668620754347779No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6180.12466891124501475No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5760.11619626679147006No Hit
ACGGGCTGCGGATGCAGCCACGGATGCAGAGGTGGTACGAACGC5430.1095391890065421No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5300.10691670381854017No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5190.10469767789023084No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5160.10409248900069193No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5110.10308384085146041No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)