FastQCFastQC Report
Wed 31 May 2023
EGAF00007931928

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931928
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495713
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41210.8313278045966113No Hit
CCGGCTCTGGGCGCTCGTCGTAAGAAAAAAA24950.503315426466524No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22830.4605487449391079No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17030.3435455596282526No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14060.2836318595639009No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11470.23138388543370864No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11270.22734929283678257No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10760.21706108171462118No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10120.20415038540445782No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG9200.18559125945859803No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8920.17994282982290155No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8870.17893418167367003No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG8830.17812726315428484No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7240.1460522520087228No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6930.13979863348348742No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6610.13334328532840575No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6010.12123950753762762No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5510.1111530260453125No Hit
ACTCGTCCGAGCCGCCCGGCTACCGTACCGC5480.1105478371557736No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5290.10671497418869387No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5270.10631151492900126No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5220.10530286677976974No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5160.10409248900069193No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5040.10167173344253631No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5040.10167173344253631No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)