FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931946

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931946
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences562608
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47830.8501478827176292No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31260.5556266530159543No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18270.3247376503711287No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16440.29221056223871683No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15310.27212552967607995No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14330.2547066518783949No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12600.2239570002559509No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11450.20351648039132042No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA10740.1908966811705486No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA10680.18983021926456786No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10410.18503114068765464No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10090.17934334385575748No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT10010.17792139464778317No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8970.1594360549441174No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8570.15232630890424592No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8320.14788271762932628No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8290.1473494866763359No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG7640.1357961493615448No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7600.13508517475755766No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7310.12993060887865085No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7200.12797542871768622No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7010.12459829934874728No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6820.12122116997980831No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6670.11855501521485654No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6560.11659983505389188No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6510.11571111679890794No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6450.11464465489292722No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6430.11428916759093366No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT6380.11340044933594973No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6290.11180075647697864No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5910.10504649773910077No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5910.10504649773910077No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5670.1007806501151779No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5660.1006029064641811No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)