FastQCFastQC Report
Wed 31 May 2023
EGAF00007931947

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931947
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences573624
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG18640.32495153619792755No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16380.28555290573616166No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14760.25731140956445336No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13480.23499714098433816No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12420.21651813731643027No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10740.18723065980502906No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10440.18200075310656458No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT9780.1704949583699427No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9230.16090679608942443No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8910.15532822894439563No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8310.14486841554746663No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA7540.13144498835474108No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7250.12638941187955874No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7230.12604075143299442No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7140.1244717794234551No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7130.12429744920017292No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6840.1192418727249906No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6670.11627825892919404No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6650.11592959848262974No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6590.11488361714293684No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6580.1147092869196547No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6330.11035103133760094No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6270.10930504999790804No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6150.10721308731852223No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6150.10721308731852223No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6000.10459813396928999No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5920.10320349218303278No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT5740.10006554816395408No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)