FastQCFastQC Report
Wed 31 May 2023
EGAF00007931948

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931948
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences573624
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47430.8268482490272374No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA32230.5618663096383694No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG19340.33715465182767806No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16540.28834218930867606No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15110.2634129673793286No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15010.26166966514650714No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13390.23342816897479884No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA11380.1983877940950867No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA11300.19699315230882947No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11100.19350654784318647No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10980.19141458516380067No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10850.18914829226113272No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT10130.17659651618481795No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9640.16805433524399258No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8970.15637421028408852No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8800.153410596488292No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8210.1431251133146451No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG7870.13719788572305203No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7610.13266529991771614No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7430.12952735589863743No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7320.12760972344253377No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7180.12516910031658368No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6830.11906754250170845No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6770.11802156116201554No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6740.11749857049216908No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6730.11732424026888694No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6590.11488361714293684No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6570.11453495669637255No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6280.10947938022119019No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT6200.10808473843493299No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6200.10808473843493299No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6020.10494679441585429No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5960.10390081307616139No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA5900.10285483173646849No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5780.10076286905708269No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5760.10041420861051839No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)