FastQCFastQC Report
Sun 21 May 2023
EGAF00007931950

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931950
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences562815
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19330.34345211126213765No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17550.31182537778843844No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15350.2727361566411698No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10280.18265326972450982No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9940.1766122082744774No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9590.17039346854650286No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9520.16914972060090794No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG9120.16204258948322273No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9110.1618649112052806No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8210.14587386619048887No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7410.13165960395511847No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6940.12330872489183835No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6840.12153194211241705No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6710.11922212449916936No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6230.11069356715794712No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5860.1041194708740883No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5650.10038822703730356No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)