FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931952

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931952
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences531077
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA46020.8665410100606881No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45320.8533602471957927No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA25490.47996806489454447No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA23680.4458863780581724No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20310.3824304196943193No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9340.17586903594017442No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC7030.1323725184860199No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC6570.12371087431766015No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5960.11222478096396568No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5660.10657588259329626No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)