FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931955

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931955
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528259
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11550.21864274910602566No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11390.21561393180239236No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9740.18437925335867444No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7640.14462602624848794No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6860.12986054189327584No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6400.12115269214533023No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6240.11812387484169697No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6050.11452715429363249No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6040.11433785321215541No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5630.10657650887159519No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5300.1003295731828516No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)