FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931956

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931956
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528259
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15780.29871710657082984No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14780.279786998423122No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12190.23075801832055867No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10050.19024758688446386No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9980.18892247931412431No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8450.1599594138481313No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7690.14557253165587336No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7150.1353502732561111No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7100.13440376784872574No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6630.12550661701930302No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6430.12172059538976146No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6070.11490575645658663No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5760.1090374229307972No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5680.10752301427898057No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5520.10449419697534733No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5360.10146537967171407No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)