FastQCFastQC Report
Sun 21 May 2023
EGAF00007931957

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931957
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501916
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11520.22952047753010463No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11340.22593422006869676No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8530.169948756365607No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7470.14882968464842722No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6680.13308999912335928No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6060.12073733453406546No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5890.11735031359829134No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5680.11316634655998214No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5680.11316634655998214No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5670.11296711003434838No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)