FastQCFastQC Report
Wed 31 May 2023
EGAF00007931958

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931958
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501916
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40180.8005323599964933No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15360.30602730337347284No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11780.2347006271965827No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9020.17971134612166179No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8260.16456937017349518No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8130.16197929534025615No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7570.15082204990476494No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7000.13946556794363998No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6810.1356800739565983No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6090.12133504411096677No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6070.12093657105969922No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5910.11774878664955889No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5910.11774878664955889No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5260.10479841248336375No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5110.10180986459885717No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)