FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007931966

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931966
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439770
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45401.0323578234076904No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17360.39475180207835914No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10200.2319394228801419No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9940.22602724151260886No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9720.22102462650931165No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8890.20215112445141778No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8660.19692111785706165No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7500.17054369329422198No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7010.1594015053323328No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6890.15667280623962526No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6890.15667280623962526No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5920.13461582190690588No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5340.12142710962548604No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC5310.12074493485230917No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4570.10391795711394591No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4490.10209882438547421No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4410.10027969165700253No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)