FastQCFastQC Report
Sun 21 May 2023
EGAF00007931968

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931968
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420356
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47841.138082958254432No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA42561.0124751401193275No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA23910.5688035855322632No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA21950.5221764409215046No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18510.4403410442577244No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG11470.27286395341091835No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC11360.270247123866437No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10760.25597350816926606No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10060.2393209565225666No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9870.23480097821846246No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA9520.22647470239511272No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9320.2217168304960557No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8880.21124951231813036No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8340.19840325819067647No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7910.18817383360770396No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7390.17580336667015578No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7170.17056970758119308No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7070.16819077163166457No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6960.16557394208718323No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6570.1562960918840221No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6560.15605819828906925No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6390.15201400717487082No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5690.13536145552817136No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5580.13274462598369002No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5520.13131726441397293No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5280.12560781813510455No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT5200.12370466937548173No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5070.12061205264109469No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4820.11466471276727346No Hit
GGCTACACTTCCGGCCGTAACCTGTACACCA4710.11204788322279212No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4570.10871737289345222No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC4540.10800369210859366No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4320.10277003301963099No Hit
GTAGGTCCAACCCCTCACCAGACCCCGCAGG4290.10205635223477243No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4220.10039109707010248No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)