FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007931969

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931969
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429047
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21240.4950506587856342No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18810.4384135071449049No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC18060.42093290478665507No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12990.30276403284488645No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC11530.26873512692082685No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG11360.2647728570529569No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11010.25661524261910695No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10770.25102144986446706No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9640.22468400897803736No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9500.22142096320449742No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9380.21862406682717747No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8350.19461737292184772No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8010.18669283318610783No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7780.18133211512957786No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7750.18063289103524788No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7620.17760291995981792No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7310.170377604318408No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7160.16688148384675805No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6750.15732542122424817No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6660.15522774894125818No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6320.14730320920551826No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5880.1370479224886784No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5640.13145412973403844No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5550.12935645745104848No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5320.12399573939451856No Hit
TGCATCTTCGAAGTCTTCATCATCGTCGTCGTCTTCTTCTTCAC5110.1191011707342086No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4870.11350737797956867No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4650.10837973462114872No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG4460.10395131535705879No Hit
GGCGCGCGGTGGGGTCTGCATAGTCGCCGGTGCCCACTGACGCA4450.10371824065894877No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4390.1023197924702888No Hit
GTAAGCGCCCTGGGTGGTCTGCATGATAGCACCCGCTTTCGGGG4320.10068826958351883No Hit
CGTACTCCTGGCGACAGAGAAAATGGCGGTGACGTTATTTAAAT4310.10045519488540881No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)