FastQCFastQC Report
Sun 21 May 2023
EGAF00007931972

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931972
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434441
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21900.5040960682808482No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13040.3001558324375462No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12460.28680534295796206No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9760.2246565126219671No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9730.22396597006267824No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9430.2170605444697899No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9080.20900421461142019No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8650.19910643792828026No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7170.16503967167003114No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7160.16480949081693486No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7040.16204732057977952No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6030.13879905441705548No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5890.13557652247370758No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5710.1314332671179746No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5620.1293616394401081No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5410.12452784152508627No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5000.11509042654813888No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4970.11439988398885004No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4900.1127886180171761No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4790.11025662863311705No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4480.10312102218713243No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)