FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931973

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931973
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409995
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13200.3219551457944609No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG12810.3124428346687155No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG11340.2765887388870596No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9880.24097854851888437No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8250.20122196612153806No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7850.19146574958231197No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7690.18756326296662154No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC7550.18414858717789243No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7190.17536799229258893No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6730.16414834327247893No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6550.1597580458298272No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6000.14634324808839133No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5820.1419529506457396No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG5690.1387821802704911No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5050.12317223380772936No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5010.12219661215380676No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG4720.11512335516286785No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4640.11317211185502263No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4590.11195258478761937No Hit
GCAGCGCTCGTACAGGCCGTCCAGGCCCTGGGTAGTGGTTTCGC4500.10975743606629348No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4210.10268417907535457No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4180.10195246283491262No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4100.10000121952706739No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)