FastQCFastQC Report
Wed 31 May 2023
EGAF00007931975

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931975
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420920
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT15360.36491494820868575No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA9820.23329848902404257No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC7230.17176660648104153No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5680.13494250688967024No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5460.12971586049605627No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG5050.11997529221704838No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA4840.11498622065950774No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4260.10120688016725268No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)