FastQCFastQC Report
Wed 31 May 2023
EGAF00007931976

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931976
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420920
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21070.500570179606576No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG16150.38368336025848143No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA10100.23995058443409675No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG8450.20075073648199182No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7920.1881592701701036No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5800.1377934049225506No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5670.13470493205359688No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5490.13042858500427634No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5070.1204504418891951No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4860.11546137033165446No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA4760.11308562197092084No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4750.11284804713484749No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4690.1114225981184073No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4580.1088092749216003No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4410.10477050270835313No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4390.1042953530362064No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)