FastQCFastQC Report
Sun 21 May 2023
EGAF00007931980

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931980
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448723
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49841.110707496607038No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18770.4182981483008448No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14670.32692774829906196No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7190.160232481954346No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7150.15934106341774323No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6370.14195840195398943No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5960.13282136195381114No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5060.11276444488024906No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG4840.10786164292893388No Hit
ATCGTCACCCCACCGTCCGCGCGTCCGCGTA4760.10607880585572836No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)