FastQCFastQC Report
Wed 31 May 2023
EGAF00007931985

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931985
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473109
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT20230.4275970230961576No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG17510.37010498637734646No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG16190.3422044391461587No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13560.2866147124658377No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12360.26125057861930334No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10320.21813155108019502No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9620.20333580633638335No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8960.1893855327207895No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6760.14288462066880991No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6170.13041392152759723No Hit
TGCCTGGTCCGGACCCCATTCACGACCTTGCTGTTCTTTATACT5940.12555246254034483No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT5720.12090237133514686No Hit
GCGTGGAGATGCTTCCGGACCACGTTCACGACCTTGCTGTTCTT5620.11878869351460235No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5420.11456133787351329No Hit
CGGAGATGCTTCCGGACCGCGTTCACGGCCCTGCTGTTCTTTGT4840.10230200651435505No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4770.10082243203997387No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)