FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931986

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931986
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473109
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24600.5199647438539533No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23750.5019984823793249No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG20290.42886522978848424No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG17410.3679913085568019No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG16060.33945665797945085No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13620.2878829191581644No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13290.28090778235036745No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA9410.19889708291323988No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8590.18156492478477476No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6900.14584376961757226No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6780.14330735623291885No Hit
CAGCGTGGCCGCGACCGCCAGGATCCACAGC6440.13612085164306745No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG5970.1261865658865082No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5910.12491835919418147No Hit
GGCCGCGACCGTCAGGATCCGCAACAGCAGT5850.12365015250185477No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5330.11265902783502323No Hit
CGTGGTCGTGATCGTCAGGACCCGCAGCAAC5230.11054535001447868No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5170.10927714332215198No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4910.10378158098873622No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)