FastQCFastQC Report
Sun 21 May 2023
EGAF00007931987

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931987
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449359
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT18560.4130327867028367No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG16250.3616262275819556No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG15760.3507218059502536No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12220.27194292314163065No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11970.26637944271729286No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10810.24056489354836558No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9770.21742081498312038No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8490.188935795210511No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6490.14442795181580872No Hit
TGCCTGGTCCGGACCCCATTCACGACCTTGCTGTTCTTTATACT5840.1299629027125305No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT5560.12373180463727221No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5370.1195035595147755No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5340.11883594186385496No Hit
GCGTGGAGATGCTTCCGGACCACGTTCACGACCTTGCTGTTCTT5240.11661054969411984No Hit
CGGAGATGCTTCCGGACCGCGTTCACGGCCCTGCTGTTCTTTGT4830.10748644179820589No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)