FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931988

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931988
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449359
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50671.127606212404781No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25190.5605762875562745No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG18780.41792864947625397No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16270.36207130601590265No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG15810.3518345020351212No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12820.2852952761600413No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12040.2679372172361074No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8840.19672466780458384No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7820.17402566767328573No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6640.1477660400704114No Hit
CAGCGTGGCCGCGACCGCCAGGATCCACAGC6180.13752923608962989No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG5990.1333009909671332No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5780.12862766741068946No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5660.12595719680700732No Hit
GGCCGCGACCGTCAGGATCCGCAACAGCAGT5550.12350926542029868No Hit
CGTGGTCGTGATCGTCAGGACCCGCAGCAAC5180.11527531439227878No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4890.10882167710004695No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4860.10815405944912641No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)