FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931989

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931989
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411195
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14370.3494692299274067No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14080.3424166149880227No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12060.29329150403093424No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10920.26556743151059714No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9890.24051848879485402No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9200.22373812911149213No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8940.21741509502790649No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8790.21376719074891476No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8420.20476902686073517No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7780.1892046352703705No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6290.15296878609905276No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6180.15029365629445884No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5920.14397062221087317No Hit
CACACCGTTCAGCTGCTGGGTGTGTTCATCAGCTTCGTTGTATT5900.1434842349736743No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5870.14275465411787594No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5710.1388635562202848No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5390.13108136042510246No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5110.1242719391043179No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC5040.12256958377412178No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5020.12208319653692287No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4830.11746251778353337No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4750.11551696883473778No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4500.10943712836975159No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC4360.10603241770935931No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4330.10530283685356097No Hit
AACACACTGGCCGTTGCGGCAGACGTAGTTAGTACGGCCAACCA4310.10481644961636206No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4230.10287090066756649No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC4200.10214131981176815No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)