FastQCFastQC Report
Wed 31 May 2023
EGAF00007931990

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931990
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411195
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46041.1196634200318583No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23940.5822055229270784No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20670.5026812096450589No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14800.359926555527183No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12080.29377789126813314No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11630.28283417843115793No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9970.2424640377436496No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9900.24076168241345344No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9330.22689964615328495No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9200.22373812911149213No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7370.17923369690779314No Hit
CGTGAAGGCGCGAAAAACACCAACAAACAGC6760.16439888617322682No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6760.16439888617322682No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6620.16099417551283454No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6600.16050778827563564No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6570.1597782074198373No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6370.15491433504784835No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6000.14591617115966876No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5680.13813397536448643No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5360.1303517795693041No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT5110.1242719391043179No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5020.12208319653692287No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4880.1186784858765306No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4860.1181920986393317No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4710.11454419436034No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC4440.1079779666581549No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4420.107491579420956No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG4410.10724838580235656No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4310.10481644961636206No Hit
CTGCACCATGTGGACGTAGATCCGTCCGGTA4190.10189812619316868No Hit
CATGGTGAAGGCTTCCTGAGCGAGGGTAAAG4160.10116854533737034No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)