FastQCFastQC Report
Sun 21 May 2023
EGAF00007931993

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931993
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475495
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG27210.5722457649396945No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA26420.5556314998054659No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG25850.5436439920503896No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG24940.5245060410729872No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA24850.5226132766906066No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15650.32913069538060336No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13650.28706926466103744No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11980.25194797001019986No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11220.23596462633676485No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8530.17939200201894867No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8480.17834046625095953No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8440.17749923763656822No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8410.17686831617577473No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8200.1724518659502203No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8090.17013848726064418No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8010.16845603003186155No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8010.16845603003186155No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG7850.16509111557429626No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC7820.16446019411350277No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7780.16361896549911145No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA7750.16298804403831796No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7550.15878190096636138No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7400.15562729366239392No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7340.15436545074080696No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7130.14994900051525253No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6720.1413264072177415No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6690.140695485756948No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6280.13207289245943699No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6250.13144197099864352No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5740.12071630616515419No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC5390.11335555578923016No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG5390.11335555578923016No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5200.10935971987087141No Hit
GCGACGACCGGCCGCAAATTCTTTAAATTCACGCAGTGCCAGCG5200.10935971987087141No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5150.10830818410288226No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5100.10725664833489311No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5080.10683603402769745No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5010.10536388395251264No Hit
GTCGGACGGGGTTTTTGCACCACCCATGCCTGCGGAGCCCGGCT4980.10473296249171916No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT4840.10178866234134955No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG4760.1001062051125669No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)