FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007931995

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007931995
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458303
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG26400.5760381232503388No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA25100.5476726096054356No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG24290.5299987126420731No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG24000.5236710211366716No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA23650.5160341520784284No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG14840.32380324806950855No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12800.2792912112728915No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11800.2574715853921969No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10700.23346999692343273No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8410.18350305365664202No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8340.18197567984499338No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8270.18044830603334477No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC8120.17717536215124055No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8060.17586618459839887No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7910.17259324071629467No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7750.16910210057538352No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7710.16822931554015574No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7660.167138334246121No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7610.16604735295208628No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7520.16408358662282377No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7470.16299260532878904No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA7460.16277440906998208No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7450.16255621281117513No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG7340.16015605396429874No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6480.14139117570690132No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6370.13899101686002494No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6210.13549987671911376No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6050.13200873657820264No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5810.12677202636683593No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5270.1149894283912608No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5230.11411664335603301No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5140.1121528770267705No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG5140.1121528770267705No Hit
GCGACGACCGGCCGCAAATTCTTTAAATTCACGCAGTGCCAGCG5090.11106189573273577No Hit
GTCGGACGGGGTTTTTGCACCACCCATGCCTGCGGAGCCCGGCT4860.10604338178017601No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4830.10538879300375516No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT4820.1051705967449482No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4730.1032068304156857No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC4640.10124306408642318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)