FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007932001

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932001
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485134
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15120.31166646740900456No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14760.3042458372325996No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC14470.29826810736827347No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8070.1663457931210758No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7830.16139870633680592No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG7770.16016193464073844No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7760.1599558060247272No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7180.14800034629607492No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT7060.14552680290393993No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6930.14284713089579373No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6720.13851842995955757No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT6150.1267690988469165No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT6070.12512006991882654No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5970.1230587837587141No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5940.12244039791068034No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5580.11501976773427547No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5550.11440138188624174No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5020.10347656523764569No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4860.10017850738146573No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)