FastQCFastQC Report
Sun 21 May 2023
EGAF00007932005

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932005
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450318
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12050.26758868177598943No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11350.2520441110504133No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10810.24005258506211166No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9780.21717985956590677No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9220.20474420298544582No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9010.20008083176777297No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8290.18409213045003753No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7850.17432125742253252No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7680.1705461473891783No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7600.16876962502054105No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6570.14589689952433615No Hit
TTGGGATACAATGGTAGAACGCAGCTGCAGACCGCCGCTACCTG6430.1427879853792209No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5830.12946406761444135No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5700.12657721876540579No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5700.12657721876540579No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG5100.11325330100062624No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4860.10792373389471441No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG4620.10259416678880258No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)