FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932006

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932006
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450318
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28260.6275565267211171No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22020.48898778196740966No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17540.38950252932372237No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13240.29401445200946885No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10600.2353892138444388No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9960.22117703489534063No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9040.200747027656012No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8460.18786724048339173No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8420.1869789792990731No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8250.1832038692657189No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7840.17409919212645286No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7640.1696578862048597No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7420.16477244969110716No Hit
AATGGCGACACCACCATCAACGGTCAGCTGA6780.15056027074200898No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6450.14323211597138022No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6400.14212178949098192No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6240.1385687447537074No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6220.13812461416154806No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6000.13323917764779555No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5150.11436362748102452No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5110.11347536629670589No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4960.11014438685551099No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG4670.10370449326920086No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG4640.10303829738096189No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4520.100373513828006No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)