FastQCFastQC Report
Wed 31 May 2023
EGAF00007932017

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932017
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480162
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14880.30989541029902407No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13780.2869864753978866No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11700.24366776213028105No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9050.18847805532299516No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8420.17535748351598002No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7880.16411127910996706No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6880.14328497465438747No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6010.12516608977803323No Hit
TTCAACTTTCGGGCTCGGCGGCAGGATTGCACCGGTCTGTTTTT5820.12120909193147313No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5010.10433978532245368No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)