FastQCFastQC Report
Sun 21 May 2023
EGAF00007932028

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932028
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465278
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9310.20009542682009462No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8110.1743043943620803No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7980.1715103658457954No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7450.1601193265101724No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5840.1255163579623365No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4910.10552830780737538No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4880.10488353199592503No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4760.10230442875012358No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4660.10015517604528906No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)