FastQCFastQC Report
Wed 31 May 2023
EGAF00007932030

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932030
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457951
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32230.7037870863913388No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27730.605523298344146No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA18400.4017897111262996No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC13290.29020572069937617No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12950.2827813456024771No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12620.27557533447901633No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12450.2718631469305668No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12400.27077132706337576No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9410.2054804990053521No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8400.18342573768809325No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7980.1742544508036886No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7500.1637729800786547No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7350.1604975204770816No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6920.15110786961923875No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6560.1432467665754633No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6500.1419365827348341No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5940.12970820022229454No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5690.12424910088633936No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5610.12250218909883372No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5300.11573290592224932No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4920.10743507493159749No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4780.1043779793034626No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4730.10328615943627156No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4690.10241270354251875No Hit

[OK]Adapter Content

Adapter graph