FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932031

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932031
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489189
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17680.3614145044144492No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17170.3509890860178786No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10800.22077356604502554No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8850.18091167217578483No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7100.14513817767774828No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6860.14023209843230328No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6790.1388011586523818No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC6180.12633154057020904No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5980.12224314119900488No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5850.11958568160772218No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCGGAA5300.10834258333691069No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5150.10527628380850755No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC5110.1044586039342667No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGATTT4990.10200556431154421No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)