FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932032

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932032
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489189
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41950.8575417681100761No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10870.222204505824947No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9340.19092825063523505No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9180.18765753113827172No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8110.16578459450232935No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7760.15862989560272206No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7520.15372381635727703No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA7210.14738679733191057No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7000.14309397799214618No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG6890.1408453583379839No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6810.13920999858950223No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC6370.13021551997285302No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6210.12694480047588969No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5310.1085470033054709No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT5050.10323208412290547No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4940.10098346446874318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)