FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932034

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932034
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464779
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38960.8382478554323667No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37090.7980136796197763No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9820.21128321202119718No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9550.2054739994707162No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8150.17535215661637038No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7510.16158217131152655No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6580.14157266141542538No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6580.14157266141542538No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA6560.14114234937464903No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6410.13791500906882626No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC6390.13748469702804988No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG6000.12909361223291071No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5310.11424784682612596No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5260.11317206672418505No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4950.10650223009215133No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT4900.10542644999021039No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)