FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932036

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932036
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457877
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT62701.3693633879841092No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA58191.270865319725603No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA32650.7130735983681207No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA29270.639254646990349No Hit
GAATGCGACAACTATCGCCAGGAATACGATA14270.31165575034343285No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13320.2909078202224615No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12700.2773670658277223No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9940.21708886884468973No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9480.20704250268085098No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8720.1904441585840739No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8230.17974259462694128No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7560.1651098439100457No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7550.16489144464561445No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7310.15964986229926378No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA7180.15681067186165717No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6920.15113229098644396No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6910.1509138917220127No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6420.14021232776488007No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5960.13016596160104132No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5810.12688997263457216No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5780.12623477484127835No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5760.1257979763124158No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG5730.12514277851912195No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5550.12121159175935896No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5330.11640680794187085No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5270.11509641235528317No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC5260.11487801309085191No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4950.10810763589348231No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4940.10788923662905105No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)