FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932038

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932038
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471312
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36560.7757069626913806No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32150.6821383711851173No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15560.33014224123298364No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11540.24484842312523342No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7210.15297722103404962No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7200.15276504735716467No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6350.13473028482194385No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6240.13239637437620938No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5710.12115116950130699No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5650.11987812743999729No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5600.11881725905557253No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5470.11605900125606816No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5350.11351291713344876No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5330.11308856977967885No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4880.10354075431985607No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)