FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932039

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932039
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453968
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10800.2379022309942551No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9850.21697564586050117No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA9360.20618193352835443No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9050.19935325837944526No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8340.1837133894900081No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7630.16807352060057096No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7120.1568392485813978No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6960.15331477108518662No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6430.14163993937898706No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5950.1310665068903535No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5200.11454551862686356No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5180.11410495893983717No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4640.10220984739012441No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)