FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007932040

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932040
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453968
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23530.5183184717865577No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10370.22843019772318757No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9490.209045571494026No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9270.20419941493673563No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8310.1830525499594685No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7800.17181827794029536No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7220.1590420470165298No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6970.15353505092869982No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6750.14868889437140942No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6300.13877630141331546No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5630.12401755189793114No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5550.12225531314982553No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5190.11432523878335035No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5030.1108007612871392No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4730.1041923659817432No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)