FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932042

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932042
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502851
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27490.5466828145912009No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24410.4854320663576288No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18210.3621351056277108No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16050.3191800354379329No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16050.3191800354379329No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15780.3138106516642107No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14180.28199208115326413No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11850.23565628784669815No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11360.22591185062772073No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10590.21059916356932767No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA10230.2034399852043647No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10040.1996615299561898No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9300.184945441094877No Hit
GGTATGGATGAACCACCGTCTGGTTGGGAAC9030.17957605732115475No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8620.1714225486277247No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8450.16804182551093663No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8130.16167811140874733No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7820.1555132633722514No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7690.15292800451823702No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7480.14875181713867527No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7450.14815521894159503No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC7140.1419903709050991No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG6910.13741645139415054No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG6910.13741645139415054No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6610.1314504694233481No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6580.13085387122626782No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6530.12985954089780072No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6270.12468902318977192No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6220.12369469286130486No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC6150.12230263040145092No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6080.12091056794159702No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6010.1195185054817431No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5880.11693324662772869No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5650.11235932711678011No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)