FastQCFastQC Report
Wed 31 May 2023
EGAF00007932044

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932044
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503837
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27700.5497809807536961No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24460.485474468925466No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16630.33006706534057645No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16450.32649448135011916No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16350.3245097124665318No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16020.3179599751506936No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14500.28779148812016586No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11930.2367829278119709No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11540.22904232916598027No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10110.20066013413068115No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9620.19093476660110312No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA9390.1863697981688522No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9210.182797214178395No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9070.18001853774137272No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9000.17862919952286158No Hit
GGTATGGATGAACCACCGTCTGGTTGGGAAC8300.16473581733775008No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8230.16334647911923897No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8160.16195714090072783No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7580.15044548137592118No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7560.1500485275992037No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC7480.14846071249233384No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7180.1425064058415718No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG6790.13476580719558112No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6600.13099474631676514No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG6570.13039931565168894No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC6470.1284145467681016No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6460.12821606987974285No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6460.12821606987974285No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6270.12444500900092689No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6200.12305567078241574No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6090.12087242501046964No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5980.11868917923852358No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5770.11452116458299014No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5680.11273487258776152No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5280.10479579705341212No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)