FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932046

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932046
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472457
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17000.35982110541276774No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14960.3166425727632356No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10640.22520568009363814No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8610.18223880691787825No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7760.16424775164723984No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7480.1583212863816178No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7210.15260648058976795No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6930.1466800153241459No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6630.14033023111097942No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6600.13969525268966276No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6170.13059389531745746No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5950.1259373868944687No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5800.12276249478788545No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5380.11387279688945239No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4770.10096156898934718No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)