FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932048

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932048
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448702
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38620.8607048776247933No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16080.35836702310219254No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14530.3238229381638593No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9910.22085927854121443No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7220.1609085762933974No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6880.1533311641133759No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6860.15288543398513937No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6720.14976532308748344No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6210.13839920481745122No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6000.13371903847096736No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5460.1216843250085803No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5460.1216843250085803No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5220.11633556346974162No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5110.11388404776444055No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4520.10073500898146208No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)