FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932049

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932049
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463774
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG14000.3018711700095305No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11870.25594362771522333No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10940.2358907571360188No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9080.19578501597760978No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7530.1623635650122689No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7010.15115120726905779No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6750.1455450283974522No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6510.14037009405443168No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6250.13476391518282613No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6110.1317452034827308No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5610.12096409026810472No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5440.11729851177513186No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)