FastQCFastQC Report
Wed 31 May 2023
EGAF00007932050

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932050
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463774
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16780.36181415948285156No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15200.3277458417246331No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG14550.31373039454561924No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12250.2641372737583392No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9150.19729437182765744No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8690.18737574767020143No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7780.16775412161958195No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7410.15977609784075864No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7050.15201369632622785No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6910.14899498462613256No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6170.13303893706848596No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5900.12721713593258785No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5430.11708288951083932No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC4910.1058705317676282No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4900.10565490950333568No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4660.10047997516031515No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4640.10004873063173012No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)