FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932055

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932055
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439444
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG17130.3898107608705546No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13040.29673860605674446No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11730.26692820928263894No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG11540.26260456394899007No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9880.22482955734974197No Hit
CGGACCGGACGGCATGTCTTTGGCTGGTGCCTGTGCAGGCGGAC9300.21163106106807691No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8430.19183331664557943No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8010.18227578485540818No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7140.16247804043291067No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6870.15633391285351492No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6840.1556512320113598No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6360.14472833853687841No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG5880.13380544506239703No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5750.13084716141305833No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5570.1267510763601278No Hit
TTCCGGCGCGGAGGTCGGAGAATCGGAGCTGGTGTCTTCGGTCA5400.12288255158791564No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4900.11150453755199752No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG4830.10991161558696898No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4600.10467772913044665No Hit
ACCCGGACGCGCCGGCGGAGGTTTGTTTGGGTTCGGGGTACGGA4500.10240212632326304No Hit

[OK]Adapter Content

Adapter graph